By Brent Kendall 

WASHINGTON--The Federal Trade Commission on Thursday sued to block Sysco Corp.'s planned acquisition of rival U.S. Foods Inc., a long-awaited move that sets the stage for a major antitrust battle in court.

The FTC, in a 3-2 vote, alleged the proposed tie up of the nation's two largest food distributors would create a dominant national food service distributor that could raise prices and reduce service for customers.

The two companies provide food and related supplies to restaurants and other institutions like hospitals and schools. Postmerger, the combined companies were expected to generate more than $65 billion in annual revenue. Sysco and U.S. Foods have said the $3.5 billion merger would allow them to improve service and achieve hundreds of millions of dollars in cost savings.

The commission had been investigating the merger for more than a year. Lengthy settlement talks between the two sides failed to produce an agreement to allow the merger. Sysco recently offered to address FTC concerns about competition by selling off a large package of assets that generate $4.6 billion in annual revenue, far above its original $2 billion divestiture commitment.

A round of meetings last week between the companies and the FTC's five commissioners failed to spark further settlement discussions.

The FTC's case will move forward amid a partisan split on the wisdom of filing a lawsuit. The FTC's three Democratic commissioners voted in favor of the merger challenge, while the commission's two Republicans voted against it.

Sysco in recent days began escalating its preparations for a government lawsuit, hiring top antitrust lawyers who are former FTC officials to lead the company's defense. Sysco has said it could keep the merger agreement in place long enough for any case to go to trial.

The companies couldn't immediately be reached for comment.

The lawsuit is the FTC's highest-profile merger challenge since the commission in 2007 sought to stop Whole Foods Market Inc. from acquiring rival organic supermarket chain Wild Oats Markets, a case brought under Republican leadership.

Since Obama administration nominees took the helm at the FTC in 2009, the agency has won some notable hospital-merger cases, but it hadn't brought a marquee case.

Recent headline-grabbing merger lawsuits under the Obama administration have come from the Justice Department, which shares U.S. antitrust authority.

The FTC's decision to sue doesn't necessarily foreclose the possibility of a settlement down the road, a point underscored by recent Justice Department cases. The department in 2013 filed major antitrust lawsuits challenging mergers in the airline and beer industries. Both cases ended up settling before trial, with the government agreeing to allow the mergers after the companies involved made additional concessions.

Write to Brent Kendall at brent.kendall@wsj.com

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