By Atsuko Fukase 

TOKYO--The top adviser on mergers and acquisitions in Japan is neither Japanese nor American but an unusual blend of the two that has overcome expectations of a culture clash.

Mitsubishi UFJ Morgan Stanley Securities landed the No. 1 spot in the 2014 rankings for Japan-related M&A for the second consecutive year, according to data-tracking firm Dealogic. It advised on deals with a value of $41 billion, beating out Goldman Sachs Group Inc. at $21.9 billion and Nomura Holdings Inc. at $21.5 billion.

Mitsubishi UFJ Morgan Stanley Securities is part of a web of ties between two financial institutions--one based in Tokyo, one in New York--each with long histories. The former Mitsubishi Bank, now called Mitsubishi UFJ Financial Group Inc., or MUFG, after a series of mergers, is Japan's largest bank and sits at the center of the Mitsubishi group of companies, which are linked through cross-shareholdings and informal ties.

The Japanese bank injected around $9 billion to take a 20% stake in Morgan Stanley in October 2008, as the New York firm faced one of the most serious crises since its founding in 1935 because of the global financial meltdown.

Two years later, they expanded their ties by setting up two brokerage joint ventures. Mitsubishi UFJ Morgan Stanley Securities--60% owned by the Japanese side and 40% by the U.S. firm--focuses on investment banking. It was started with about 100 Tokyo-based bankers at Morgan Stanley and 300 people from the Japanese side's banking and brokerage units.

For the venture, the biggest deal in 2014 came in January when Japan's Suntory Holdings Ltd. acquired spirits maker Beam Inc. of the U.S. for $16 billion.

The deal illustrated the chief advantage of the Mitsubishi-Morgan Stanley combination: familiarity with the U.S. market combined with the ability to come up with a lot of cash in a hurry. The Japanese bank provided a bridge loan of $12 billion, people close to the deal said. In addition, Morgan Stanley handled legal and regulatory issues in the U.S., according to Takashi Nagaoka, the president of Mitsubishi UFJ Morgan Stanley Securities.

On the lender side, "we had sufficient knowledge of Suntory's financial structure and business strategy, while Morgan Stanley had execution capability," Mr. Nagaoka said.

Bankers at the Japanese-American amalgam are largely put on separate compensation tracks, according to executives. Those hailing from the Morgan Stanley side are eligible for big Wall Street-style bonuses in good years but don't have Japanese-style job security. Many of those coming from the Mitsubishi UFJ side enjoy job security on a par with peers who work at the Japanese bank's other units, and their compensation adheres more closely to the bank's traditional seniority-based system.

The venture got off to a rocky start with trading losses and job cuts. In 2011, it booked a loss of Yen145 billion ($1.2 billion) due to poorly hedged derivatives bets. The same year, it started cutting jobs--about 20% of its workforce--responding to market volatility caused by Europe's debt crisis. In the M&A advisory rankings in 2011 and 2012, it ranked eighth and fifth, respectively.

Since then, it has found its footing. Jonathan Kindred, the chief executive of Morgan Stanley in Japan, said the combination works better than outsiders might suppose.

"It's easy when one thinks about a Japanese and American joint venture to conjure up negatives or reasons why it can't work. But the reality is that our core business cultures are very complementary," said Mr. Kindred, who has worked at Morgan Stanley Japan for more than two decades.

The joint venture's other deals in 2014 included Ajinomoto Co.'s acquisition of U.S. frozen-foods maker Windsor Quality Holdings LP for $800 million in September. Morgan Stanley advised Ajinomoto and Mitsubishi UFJ provided loans for part of the purchase, according to a person familiar with the matter.

It was the second straight year the venture was ranked No. 1, after a strong performance in 2013 that included advising on Applied Materials Inc.'s $9 billion plus takeover of Tokyo Electron Ltd., which hasn't closed yet.

Rival bankers concede that Mitsubishi UFJ's ability to make large loans gives the joint venture an edge that pure investment banks can't directly match. Still, some see the success of the Mitsubishi UFJ-Morgan Stanley alliance as temporary. So far, many of its clients have been Japanese companies seeking to expand overseas, but the weak yen is likely to make such acquisitions harder in 2015. Rustling up business outside of Japan is mainly a job for Morgan Stanley itself, rather than the Tokyo-based joint venture.

Mitsubishi UFJ has its own brokerage unit, called Mitsubishi UFJ Securities Holdings, that does business abroad. But the unit's overseas pretax profit accounted for only 5% of its total pretax profit in the year ended March 2014.

Write to Atsuko Fukase at atsuko.fukase@wsj.com

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