By Andrew R. Johnson 
 

Discover Financial Services (DFS) is making headway in its efforts to bring eBay Inc.'s (EBAY) online-payments service to physical retailers, even as one of the country's largest merchant processors has opted not to support the service.

The credit-card company said Tuesday it has deals with 50 merchant acquirers, which handle card transactions for retailers, to equip eBay's PayPal service as a payment option at checkout counters.

More than two million merchant locations should be live with the service by year-end as a result of the contracts, up from 250,000 stores that have gone live since Discover and PayPal struck a partnership last August.

But at least one merchant acquirer, First Data Corp., has decided not to equip its retail clients with PayPal for the time being.

The Atlanta-based company told some clients last week that it hasn't signed on to offer its merchants PayPal in their physical stores.

"For a variety of factors and after evaluation of the PayPal product offering, First Data has decided not to implement support for this new card product," the company said in an April 23 client alert obtained by Dow Jones Newswires.

First Data, a unit of Kohlberg Kravis Roberts & Co., was ranked as the second-largest merchant acquirer in the U.S. last year based on $423.6 billion in Visa Inc. (V) and MasterCard Inc. (MA) card transactions it handled for retailers, according to The Nilson Report, a payments-industry newsletter. Including volume it handles from joint ventures and other relationships, First Data is the largest merchant acquirer, said David Robertson, publisher of the Nilson Report.

First Data's customer base included 992,000 active merchant outlets last year, according to the newsletter.

A spokesman for First Data confirmed Tuesday that the alert had been sent to some clients but indicated the company's decision could change in the future.

"We are in active negotiations" with Discover and PayPal, but "we currently do not have a contract that allows us to process" PayPal transactions in physical stores, the spokesman said.

While First Data's decision isn't likely to hamper PayPal's overall efforts to get merchants on board, it underscores the hurdles the online giant is likely to face as it morphs into a direct competitor to dominant brands like Visa, MasterCard and American Express Co. (AXP).

PayPal in December 2011 began testing its in-store payments service with Home Depot Inc. (HD), and gradually expanded into the home-improvement retailer's more than 2,000 U.S. stores in early 2012. It added additional merchants throughout last year, and in August struck a deal with Discover, which is working to equip its nearly eight million U.S. merchants to accept PayPal.

To do that, Discover is signing on merchant acquirers, which have direct processing relationships with retailers. Discover so far has deals with some of the largest merchant acquirers, including Vantiv Inc. (VNTV), Global Payments Inc. (GPN), Heartland Payment Systems Inc. (HPY) and Total System Services Inc. (TSS), the Riverwoods, Ill.-based company said.

"We hope to get all of that activated by year-end and feel like we're well on track to exceed that two million merchant goal," Roger Hochschild, president and chief operating officer of Discover, said in an interview.

Consumers can make purchases using their PayPal accounts by typing in their mobile phone number and a personal identification number on a merchant's PIN pad or by swiping a special PayPal card that is linked to their accounts. In both cases, the service allows customers to fund purchases with existing balances in their PayPal accounts as well as credit cards, debit cards and bank accounts they've registered with PayPal.

Discover, which operates a payments network that competes against Visa, MasterCard and American Express in addition to issuing cards to consumers, is helping process the transactions that PayPal customers make in physical stores.

First Data's current decision is not "hugely significant right now," Mr. Hochschild said, adding that First Data has been "a great partner of ours" in expanding Discover's own card acceptance into additional retailers.

"My perspective is we'll be able to work through this with First Data," he added.

First Data's client alert did not specify its reasons for its decision. The company's spokesman declined to discuss specific details.

"I would imagine First Data is trying to hold out on price," said James Friedman, an analyst with Susquehanna Financial Group who follows Discover and eBay. "Merchant acquiring is one of the most ... mercenary industries. You can get anything into a merchant if you just pay the distributor enough."

The broader challenge for PayPal is convincing consumers to use its service when checking out instead of pulling an existing credit or debit card from their wallets.

"Merchant acceptance has largely been addressed and is the easier bogie," Mr. Friedman said. "Now consumer acceptance is the harder challenge. At the end of the day if you solve consumer acceptance, merchant acceptance will follow. Merchants will do whatever consumers require, and First Data will do whatever [its] merchants require."

Write to Andrew R. Johnson at andrew.r.johnson@dowjones.com

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