By Kathy Chu, Gaurav Raghuvanshi and Megumi Fujikawa 

When Malaysian entrepreneur Tony Fernandes bought the struggling AirSHYAsia Bhd. in 2001, his goal was to build a budget airline group that could take advantage of the explosive travel growth he saw coming in the region.

To do that, Mr. Fernandes made AirAsia into the McDonald's of the aviation industry, bridging Asia's checkerboard of sovereign states and aviation rules by rolling out franchise-like joint ventures under the AirAsia brand, in countries from Thailand and the Philippines to India.

In roughly a decade, that model turned AirAsia into a group encompassing nine carriers, of which the three listed companies had $2.3 billion in revenue in 2013. While the number of annual airline seats in the Asia-Pacific region has doubled to 1.7 billion during the past decade, the number of seats available on budget airlines increased tenfold to 400 million, according to the CAPA-Centre for Aviation.

But as the AirAsia group grapples with its biggest crisis yet--the aftermath of the December crash of a plane operated by its Indonesian affiliate--that franchise model and the growth on which it was premised could be under strain.

AirAsia's once heady traffic growth is slowing as competition increases, causing profit to shrink at AirAsia's Malaysian flagship company. AirAsia Thailand has become unprofitable and AirAsia carriers in Indonesia and the Philippines are restructuring, creating challenges for the Malaysian group.

In 2014 the AirAsia group carried 50 million passengers, CAPA estimates, 9.3% more than the previous year but the slowest growth since the airline began operations under Mr. Fernandes in 2002.

Analysts expect AirAsia Bhd.'s earnings to be hurt by the AirAsia Flight 8501 crash, which killed all 162 people on board, when the company posts results at the end of February.

Meanwhile, cultural and regulatory tussles have hampered AirAsia's efforts to expand its franchises further in markets such as Japan and Vietnam.

There "is a limit to bringing all AirAsia's business ways into the Japanese market," said Shinzo Shimizu, a senior vice president at former joint-venture partner ANA Holdings Inc., after the partnership fell apart in 2013.

AirAsia said last year that it was setting up a second Japanese joint venture with different partners.

A spokeswoman for the AirAsia group declined to comment for this article.

Mr. Fernandes, known for his no-nonsense attitude and his trademark uniform of jeans and a red cap, overhauled AirAsia after he bought it in 2001 from the Malaysian government for one ringgit (28 U.S. cents) and the assumption of 40 million ringgit ($11 million) in debt.

He established the first joint venture in Thailand in 2003, taking a minority stake to comply with Thailand's rules barring foreigners from owning more than 49% of an airline.

It now has similar stakes in franchises in Indonesia, Thailand, the Philippines and India, as well as AirAsia X, its long-haul carrier.

Despite the minority stakes, AirAsia exercises a high degree of control over its joint ventures, dictating matters from branding to in-flight retail. The control has rankled some partners, but it also has been responsible for the airline's success in training pilots and flight attendants, and negotiating contracts for aircraft, former employees say.

"Even from the inside, you would not see much of a difference between AirSHYAsia Malaysia and AirAsia Philippines," said Dany Bolduc, who worked for the Kuala Lumpur-based flagship for two years until 2013, managing in-flight sales of items such as caps and T-shirts across the group. "The model has to be consistent across the markets [in which] they operate."

Analysts say one of AirAsia's greatest achievements has been persuading regulators in the countries where it operates to let it keep the AirAsia name despite its minority-partner status.

"AirAsia has successfully branded itself," said Yeah Kim Leng, dean of the business school at Malaysia University of Science and Technology. "It has really standardized the service quality, corporate culture and expectations that customers have."

But the franchise model has some drawbacks for AirAsia's affiliates, which grapple with higher costs than the Malaysian flagship. Affiliates may pay the flagship fees for things including maintenance and leasing planes. Cost per available seat kilometer, a common measure of aviation costs, was $3.99 in the quarter ended in September for AirAsia's Malaysia operations, compared with $5.14 for Indonesia and $5.24 for Thailand, according to AirAsia filings.

"No matter what, the cost is going to be higher than the main company," said Brian Thomas Hogan, managing director of XSQ Aviation Consultancy and a former chief executive adviser of Zest Air before its partnership in the Philippines with AirAsia.

Other would-be partners have balked at AirAsia's attempts to control them.

For ANA of Japan, one source of friction was that AirAsia relied heavily on website bookings, which account for about 85% of the AirAsia brands' ticket sales, though in Japan reservations through travel agents were more common, a spokesman for ANA said.

AirAsia also wasn't willing to alter a system that required passengers to check in at least 45 minutes before departure, even though other major Japanese airlines had a 15-minute cutoff, the spokesman said.

The Malaysian group said when the partnership dissolved that the companies had "a fundamental difference of opinion between its shareholders about how the business should be managed, from cost management to where the domestic business operations should be based."

AirAsia scrapped plans for a highly publicized partnership in Vietnam in 2011, saying it was unable to get Vietnamese regulatory approval to use the AirAsia brand, which it said was "fundamental to the successful conduct of the business model."

A person familiar with the proposed joint venture with VietJet Aviation JSC said cultural clashes were also responsible for the dissolution of the partnership.

"Vietnamese people have their own way of thinking about how to manage the company, and AirAsia thought it could do it the AirAsia way," this person said.

Anh Thu Nguyen, In-Soo Nam and Shibani Mahtani contributed to this article.

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