By Rachel Louise Ensign 

The U.S. Treasury Department announced Wednesday a $7.7 million settlement with eBay Inc. unit PayPal Inc. over multiple alleged sanctions violations by the payments company.

Those alleged violations included processing payments for a man allegedly involved in the black market for nuclear-weapons technology as well as thousands of dollars' worth of transactions involving goods and services going to and from Cuba, Sudan and Iran. In all, nearly 500 PayPal transactions, worth almost $44,000, potentially violated U.S. sanctions, according to the Treasury Department.

Under the settlement, PayPal didn't admit or deny the allegations, though the company and the Treasury said PayPal voluntarily disclosed the transactions to Treasury's Office of Foreign Assets Control, which supervises the enforcement of sanctions.

"Government compliance is a priority and a central component of how we do business around the world," PayPal chief compliance officer Gene Truono said in a statement. "We recognize that prior to April 2013, PayPal did not have a system that could scan payments in real time in order to block prohibited payments. There was a delay in the scanning, which allowed some prohibited payments to be processed."

The allegations against PayPal are the latest in a series of U.S. cases against financial institutions for having inadequate systems to block transactions that violate sanctions. Large penalties have been paid by major banks but regulators have also focused their efforts on other types of companies.

"While the spotlight has been on the banks, [Treasury's Office of Foreign Assets Control] is increasing its focus on the nonbank financial institutions," said Amanda DeBusk, a partner at law-firm Hughes Hubbard & Reed LLP.

PayPal failed to catch more than $7,000 worth of transactions over a number of years involving an account in the name of Kursad Zafer Cire, a Turkish man on a U.S. blacklist for weapons of mass destruction proliferation, the Treasury Department alleged. Mr. Cire couldn't be reached for comment.

Mr. Cire was blacklisted in 2009 for his alleged involvement in a sales network for nuclear technology operated by Pakistani scientist A.Q. Khan that the State Department said provided "one-stop shopping" for Iran, Libya and North Korea in their efforts to develop nuclear weapons.

PayPal blocked Mr. Cire's account in April 2013, after it had processed 136 transactions involving the account since October 2009, the Treasury Department said. At first, the company didn't catch Mr. Cire's transactions because its automated filter meant to catch and block transactions involving the sanctions blacklist wasn't working properly. The filter later flagged the transactions multiple times, but the alerts were dismissed by PayPal staffers, according to the Treasury Department.

"PayPal demonstrated reckless disregard for U.S. economic sanctions requirements," the Treasury Department said in the settlement. "PayPal agents engaged in a pattern of conduct by repeatedly ignoring certain warning signs about potential matches to the [blacklist]."

In addition, the company processed thousands of dollars' worth of transactions involving goods and services going to and from Cuba, Sudan and Iran, the Treasury Department said. PayPal also processed transactions involving another blacklisted entity, U.K. charity Interpal, which the U.S. has accused of supporting Hamas.

"With all these screening tools, there's really a lot of discretion that companies have in terms of how they set the tool," Ms. DeBusk said. Another issue with the tools can be "human error...where someone should have noticed the potential issue but the process failed," she said.

PayPal self-reported the transactions, cooperated with the investigation and has improved its sanctions compliance program, the department said.

"As part of our commitment to compliance, we hired the right people, increased our compliance budget, and over two years worked to build a new scanning payment system. We've now put in place proprietary state-of-the art systems that allow for real-time scanning of potentially sanctioned payments before they are processed," Mr. Truono said in his statement.

EBay plans to spin off PayPal as a separate publicly traded company.

Write to Rachel Louise Ensign at rachel.ensign@wsj.com

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